Molecular Genetics

Genetics is an integral part of pathology with implications in disease pathogenesis and progression, identification of diagnostic and prognostic biomarkers, as well as targeted treatments. The RCPAQAP Molecular Genetics discipline offers diagnostic and technical proficiency testing programs for inherited diseases, oncology, molecular haematology and rare genetic disorders (as sample exchanges).

In addition, the RCPAQAP Molecular Genetics discipline partners with major external quality assurance providers to provide customers with as many options for molecular genetics testing as is currently available, this includes the:

  • European Molecular Genetics Quality Network (EMQN) – View catalogue
  • Cystic Fibrosis European Network (CF Network) – View catalogue
  • UK National External Quality Assessment Scheme for Leucocyte Immunophenotyping (UK NEQAS LI) – View catalogue
  • Quality Control for Molecular Diagnostics (QCMD) – View Catalogue
  • Australasian Society of Diagnostic Genomics (ASDG)

BCR-ABL Qualitative

This module qualitatively assesses laboratory performance in the detection and identification of BCR-ABL fusion transcripts in chronic myeloid leukaemia (CML) and acute lymphoblastic leukaemia (ALL).

Catalogue Number

23140102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

RNA

Sample volume

Up to 2µg of lyophilised, purified RNA provided in each case

Schedule

April, September

Measurand/Test

Molecular genetic testing for BCR-ABL1 fusion transcripts (p190, p210, e1a2, e1a3, e13a2, e13a3, e14a2, e14a3).

Storage and Handling

Upon receipt, store samples at -70°C or according to your standard operating procedure

Additional Comments

Available to order in myQAP under the Haematology Discipline


Product details last updated on August 21, 2024

Chimerism Analysis

This module quantitatively assesses laboratory performance in the evaluation and reporting of donor versus recipient cells in post-transplant peripheral blood or bone marrow specimens.

Catalogue Number

23150102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

DNA

Sample volume

Up to 1.5µg of purified DNA in TE pH 8.0 provided in each case

Schedule

February, July

Measurand/Test

Chimerism analysis of donor and recipient DNA.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Additional Comments

Available to order in myQAP under the Haematology Discipline


Product details last updated on August 21, 2024

Coeliac Disease HLA Genotyping

This module qualitatively assesses laboratory performance in the detection, reporting and interpretation of the HLA-DQ haplotypes and associated HLA-DQA1 and HLA-DQB1 alleles.

Catalogue Number

23010102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

January, June

Measurand/Test

Molecular genetic testing for HLA-DQA1 and HLA-DQB1 alleles.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Product details last updated on August 21, 2024

FLT3 ITD and TKD

This module qualitatively and quantitatively assesses laboratory performance in the detection of internal tandem duplication (ITD) and tyrosine kinase domain (TKD) variants of the fms related receptor tyrosine kinase 3 (FLT3) gene.

Catalogue Number

23160102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

March, August

Measurand/Test

Molecular genetic testing for FLT3 ITD and TKD gene variants.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Additional Comments

Available to order in myQAP under the Haematology Discipline


Product details last updated on August 21, 2024

Hereditary Haemochromatosis (HFE)

This module qualitatively assesses laboratory performance in the detection of hereditary hemochromatosis gene variants (C282Y, H63D).

Catalogue Number

23170102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

February, July

Measurand/Test

Molecular genetic testing for HFE gene variants, C282Y and H63D.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Additional Comments

Available to order in myQAP under the Haematology Discipline


Product details last updated on August 21, 2024

Human Leukocyte Antigen B*57

This module qualitatively assesses laboratory performance in the detection, reporting and interpretation of the HLA-B*5701 allele.

Catalogue Number

23020102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

January, June

Measurand/Test

Molecular genetic testing for HLA-B*57:01.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Product details last updated on August 21, 2024

IDH Mutation Analysis in AML (IDH1, IDH2)

This module qualitatively assesses laboratory performance in the detection of isocitrate dehydrogenase (IDH) 1 and 2 gene variants in acute myeloid leukaemia (AML).

Catalogue Number

23180102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

January, June

Measurand/Test

Molecular genetic testing for IDH1 and IDH2 gene variants.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Additional Comments

Available to order in myQAP under the Haematology Discipline


Product details last updated on August 21, 2024

Immunogenotyping (IgH,TCR)

This module qualitatively assesses laboratory performance in the detection of immunoglobulin heavy chain (IgH) and T-cell receptor (TCR) gene rearrangements.

Catalogue Number

23190102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

DNA

Sample volume

Up to 2µg of purified DNA in TE pH 8.0 provided in each case

Schedule

May, October

Measurand/Test

Molecular genetic testing for IgH and TCR gene rearrangement.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Additional Comments

Available to order in myQAP under the Haematology Discipline


Product details last updated on August 21, 2024

Kennedy’s Disease

This module qualitatively assesses laboratory performance in the detection of androgen receptor (AR) gene variants.

Catalogue Number

23070102

Frequency (No of surveys/year)

1

Cases/samples per survey

2

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

April

Measurand/Test

Molecular genetic testing for CAG trinucleotide repeat expansion in the AR gene.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Additional Comments

This program is not covered under the scope of accreditation by NATA. This is a sample exchange program where participating laboratories provide samples to RCPAQAP. All samples will be de-identified, re-labelled and distributed.


Product details last updated on August 21, 2024

Lymphoid NGS Panel Testing

This module qualitatively assesses laboratory performance in the detection and reporting of various genes associated with lymphoid haematological malignancy using next generation sequencing (NGS).

Catalogue Number

23260102

Frequency (No of surveys/year)

1

Cases/samples per survey

1

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

June

Measurand/Test

Next generation sequencing; Molecular genetic testing for ALK, ARID1A, ATM, BCL2, BCL6, BIRC3, B2M, BRAF, BTK, CARD11, CD274, CD79B, CDKN2A, CREBBP, CXCR4, DNMT3A, EP300, ETV6, EZH2, FOXO1, HAVCR2, ID3, IDH1, IDH2, IKZF1, JAK1, JAK2, JAK3, KLF2, KMT2A, KRAS, MEF2B, MYC, MYD88, NFKBIE, NOTCH1, NRAS, PDCD1LG2, PIM1, PTPRD, RHOA, RUNX1, SF3B1, SOCS1, STAT3, STAT5B, STAT6, TCF3, TET2, TNFAIP3, TP53, XPO1 gene variants

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Product details last updated on August 21, 2024

Maternal Cell Contamination

This module qualitatively and quantitatively assesses laboratory performance in the detection, determination and interpretation of maternal cell contamination levels in mock prenatal samples.

Catalogue Number

23090102

Frequency (No of surveys/year)

2

Cases/samples per survey

2 family trios

Sample Type

DNA

Sample volume

1µg of purified DNA in TE pH 8.0 provided in each case

Schedule

February, July

Measurand/Test

Maternal cell contamination studies.

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Product details last updated on August 21, 2024

Molecular Testing in Glioma (IDH1/2, MGMT)

This module qualitatively assesses laboratory performance in the detection, reporting and interpretation of isocitrate dehydrogenase (IDH) 1 and 2 gene variants, and methylguanine-DNA Methyltransferase (MGMT) promoter methylation in glioma.

What's new

This program is previously called IDH Mutation Analysis in Glioma. MGMT promoter methylation is now included in this module.

Catalogue Number

23030102

Frequency (No of surveys/year)

2

Cases/samples per survey

2

Sample Type

FFPE tissue sections (patient derived)

Sample volume

Virtual H&E and five unstained 6µM sections (mounted) provided in each case

Schedule

May, October

Measurand/Test

FFPE DNA extraction; Molecular genetic testing for IDH1 and IDH2 gene variants, MGMT gene methylation and variant allele frequency

Storage and Handling

Upon receipt, store samples at 2-8°C or according to your standard operating procedure

Product details last updated on August 21, 2024